perturbR | Getting Started with perturbR | Exploring perturbR Output | Approach 1: Comparison of Cluster Assignments | Approach 2: Comparison of Modularity Values | The modularity value from the solution on the original matrix: | References
Package: perturbR 0.1.3
perturbR: Random Perturbation of Count Matrices
The perturbR() function incrementally perturbs network edges (using the rewireR function)and compares the resulting community detection solutions from the rewired networks with the solution found for the original network. These comparisons aid in understanding the stability of the original solution. The package requires symmetric, weighted (specifically, count) matrices/networks.
Authors:
perturbR_0.1.3.tar.gz
perturbR_0.1.3.zip(r-4.7)perturbR_0.1.3.zip(r-4.6)perturbR_0.1.3.zip(r-4.5)
perturbR_0.1.3.tgz(r-4.6-any)perturbR_0.1.3.tgz(r-4.5-any)
perturbR_0.1.3.tar.gz(r-4.7-any)perturbR_0.1.3.tar.gz(r-4.6-any)
perturbR_0.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
perturbR/json (API)
| # Install 'perturbR' in R: |
| install.packages('perturbR', repos = c('https://kgates.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- exampledata - Example, symmetric weighted count matrix
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:8a8eba5b05. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 120 | ||
| source / vignettes | OK | 200 | ||
| linux-release-x86_64 | OK | 124 | ||
| macos-release-arm64 | OK | 139 | ||
| macos-oldrel-arm64 | OK | 204 | ||
| windows-devel | OK | 88 | ||
| windows-release | OK | 104 | ||
| windows-oldrel | OK | 73 | ||
| wasm-release | OK | 107 |
Dependencies:clicpp11farverggplot2gluegtableigraphisobandlabelinglatticelifecyclemagrittrMatrixpkgconfigR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Perturb Networks | perturbR-package |
| Example, symmetric weighted count matrix | exampledata |
| Perturb networks and evaluate subgroup structures. | evalClust perturbR |
| Rewire graph by randomly assigning new values for a given degree of perturbation. | rewireR |
